Bänsch F, Daniel M, Lanig H, Steinbeck C, Zielesny A (2024)
Publication Type: Journal article
Publication year: 2024
Book Volume: 16
Article Number: 96
Journal Issue: 1
DOI: 10.1186/s13321-024-00890-5
An automated pipeline for comprehensive calculation of intermolecular interaction energies based on molecular force-fields using the Tinker molecular modelling package is presented. Starting with non-optimized chemically intuitive monomer structures, the pipeline allows the approximation of global minimum energy monomers and dimers, configuration sampling for various monomer–monomer distances, estimation of coordination numbers by molecular dynamics simulations, and the evaluation of differential pair interaction energies. The latter are used to derive Flory–Huggins parameters and isotropic particle–particle repulsions for Dissipative Particle Dynamics (DPD). The computational results for force fields MM3, MMFF94, OPLS-AA and AMOEBA09 are analyzed with Density Functional Theory (DFT) calculations and DPD simulations for a mixture of the non-ionic polyoxyethylene alkyl ether surfactant C
APA:
Bänsch, F., Daniel, M., Lanig, H., Steinbeck, C., & Zielesny, A. (2024). An automated calculation pipeline for differential pair interaction energies with molecular force fields using the Tinker Molecular Modeling Package. Journal of Cheminformatics , 16(1). https://doi.org/10.1186/s13321-024-00890-5
MLA:
Bänsch, Felix, et al. "An automated calculation pipeline for differential pair interaction energies with molecular force fields using the Tinker Molecular Modeling Package." Journal of Cheminformatics 16.1 (2024).
BibTeX: Download