From Supervised to Unsupervised Harmonization of Diffusion Mri Acquisitions
Weninger L, Ahmad M, Merhof D (2022)
Publication Type: Conference contribution
Publication year: 2022
Journal
Publisher: IEEE Computer Society
Book Volume: 2022-March
Conference Proceedings Title: Proceedings - International Symposium on Biomedical Imaging
Event location: Kolkata, IND
ISBN: 9781665429238
DOI: 10.1109/ISBI52829.2022.9761445
Abstract
Diffusion imaging is an MRI technique that captures the diffusion process of water molecules in the human brain. A major problem in diffusion imaging is the variability that arises due to differences in employed hardware and acquisition parameters. In order to allow multi-centric studies, a harmonization method that removes this acquisition-induced variability is necessary. In recent years, several methods for harmonization have been presented. However, available methods for harmonization of raw diffusion acquisitions often necessitate paired data. Here, an approach based on cyclic neural networks, that does not necessarily require such paired acquisitions, was developed. The proposed architecture can be trained either without paired data, or with paired data, as well as with a combination of both. A dataset from the Human Connectome Project, containing 161 subjects which were scanned on a 3T and a 7T MRI scanner was used for training and evaluation of the proposed architecture and training scheme. While supervised training of the neural network showed superior results compared to a completely unsupervised approach, we demonstrate that (a) a completely unsupervised harmonization is better than a naive approach to data merging, and (b) harmonization based on unpaired data is already substantially improved when data of only a single subject acquired on both scanners is available.
Involved external institutions
Germany (DE)How to cite
APA:
Weninger, L., Ahmad, M., & Merhof, D. (2022). From Supervised to Unsupervised Harmonization of Diffusion Mri Acquisitions. In Proceedings - International Symposium on Biomedical Imaging. Kolkata, IND: IEEE Computer Society.
MLA:
Weninger, Leon, Mushawar Ahmad, and Dorit Merhof. "From Supervised to Unsupervised Harmonization of Diffusion Mri Acquisitions." Proceedings of the 19th IEEE International Symposium on Biomedical Imaging, ISBI 2022, Kolkata, IND IEEE Computer Society, 2022.
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