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Benchmarking framework for myocardial tracking and deformation algorithms: An open access database

Tobon-Gomez C, De Craene M, Mcleod KS, Tautz L, Shi W, Hennemuth A, Prakosa A, Wang H, Carr-White G, Kapetanakis S, Lutz A, Rasche V, Schaeffter T, Butakoff C, Friman O, Mansi T, Sermesant M, Zhuang X, Ourselin S, Peitgen HO, Pennec X, Razavi R, Rueckert D, Frangi AF, Rhode KS (2013)

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Publication Type: Journal article

Publication year: 2013

Journal

Book Volume: 17

Pages Range: 632-648

Journal Issue: 6

DOI: 10.1016/j.media.2013.03.008

Abstract

In this paper we present a benchmarking framework for the validation of cardiac motion analysis algorithms. The reported methods are the response to an open challenge that was issued to the medical imaging community through a MICCAI workshop. The database included magnetic resonance (MR) and 3D ultrasound (3DUS) datasets from a dynamic phantom and 15 healthy volunteers. Participants processed 3D tagged MR datasets (3DTAG), cine steady state free precession MR datasets (SSFP) and 3DUS datasets, amounting to 1158 image volumes. Ground-truth for motion tracking was based on 12 landmarks (4 walls at 3 ventricular levels). They were manually tracked by two observers in the 3DTAG data over the whole cardiac cycle, using an in-house application with 4D visualization capabilities. The median of the inter-observer variability was computed for the phantom dataset (0.77. mm) and for the volunteer datasets (0.84. mm). The ground-truth was registered to 3DUS coordinates using a point based similarity transform. Four institutions responded to the challenge by providing motion estimates for the data: Fraunhofer MEVIS (MEVIS), Bremen, Germany; Imperial College London - University College London (IUCL), UK; Universitat Pompeu Fabra (UPF), Barcelona, Spain; Inria-Asclepios project (INRIA), France. Details on the implementation and evaluation of the four methodologies are presented in this manuscript. The manually tracked landmarks were used to evaluate tracking accuracy of all methodologies. For 3DTAG, median values were computed over all time frames for the phantom dataset (MEVIS = 1.20. mm, IUCL = 0.73. mm, UPF = 1.10. mm, INRIA = 1.09. mm) and for the volunteer datasets (MEVIS = 1.33. mm, IUCL = 1.52. mm, UPF = 1.09. mm, INRIA = 1.32. mm). For 3DUS, median values were computed at end diastole and end systole for the phantom dataset (MEVIS = 4.40. mm, UPF = 3.48. mm, INRIA = 4.78. mm) and for the volunteer datasets (MEVIS = 3.51. mm, UPF = 3.71. mm, INRIA = 4.07. mm). For SSFP, median values were computed at end diastole and end systole for the phantom dataset(UPF = 6.18. mm, INRIA = 3.93. mm) and for the volunteer datasets (UPF = 3.09. mm, INRIA = 4.78. mm). Finally, strain curves were generated and qualitatively compared. Good agreement was found between the different modalities and methodologies, except for radial strain that showed a high variability in cases of lower image quality. © 2013 Elsevier B.V.

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How to cite

APA:

Tobon-Gomez, C., De Craene, M., Mcleod, K.S., Tautz, L., Shi, W., Hennemuth, A.,... Rhode, K.S. (2013). Benchmarking framework for myocardial tracking and deformation algorithms: An open access database. Medical Image Analysis, 17(6), 632-648. https://doi.org/10.1016/j.media.2013.03.008

MLA:

Tobon-Gomez, C., et al. "Benchmarking framework for myocardial tracking and deformation algorithms: An open access database." Medical Image Analysis 17.6 (2013): 632-648.

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