Reimer N, Unberath P, Busch H, Ingenerf J (2021)
Publication Type: Book chapter / Article in edited volumes
Publication year: 2021
Publisher: IOS Press
Edited Volumes: Public Health and Informatics
Series: Studies in Health Technology and Informatics
Book Volume: 281
Pages Range: 303-307
DOI: 10.3233/SHTI210169
cBioPortal is a commonly used data warehousing solution for genomic cancer studies. The software is being extended for patient care application in a molecular tumor board by the MIRACUM consortium within the Medical Informatics Initiative Germany. A key feature for this use case is the ability to enter therapy recommendations for individual patients, which requires interoperability with the hospital information system. A RESTful interface between cBioPortal and an external mediation layer was selected from the different implementation options. It achieves interoperability by using a FHIR capable server to store data and applying the HL7 FHIR Genomics Reporting implementation guide. For systems not supporting the FHIR standard, the well-established HL7 Version 2 standard is available as a fallback export format.
APA:
Reimer, N., Unberath, P., Busch, H., & Ingenerf, J. (2021). FhirSpark - Implementing a Mediation Layer to Bring FHIR to the cBioPortal for Cancer Genomics. In John Mantas, Lăcrămioara Stoicu-Tivadar, Catherine Chronaki, Arie Hasman, Patrick Weber, Parisis Gallos, Mihaela Crişan-Vida, Emmanouil Zoulias, Oana Sorina Chirila (Eds.), Public Health and Informatics. (pp. 303-307). IOS Press.
MLA:
Reimer, Niklas, et al. "FhirSpark - Implementing a Mediation Layer to Bring FHIR to the cBioPortal for Cancer Genomics." Public Health and Informatics. Ed. John Mantas, Lăcrămioara Stoicu-Tivadar, Catherine Chronaki, Arie Hasman, Patrick Weber, Parisis Gallos, Mihaela Crişan-Vida, Emmanouil Zoulias, Oana Sorina Chirila, IOS Press, 2021. 303-307.
BibTeX: Download