Fiji: An open-source platform for biological-image analysis
Schindelin J, Arganda-Carreras I, Frise E, Kaynig V, Longair M, Pietzsch T, Preibisch S, Rueden C, Saalfeld S, Schmid B, Tinevez JY, White DJ, Hartenstein V, Eliceiri K, Tomancak P, Cardona A (2012)
Publication Type: Journal article, Review article
Publication year: 2012
Journal
Book Volume: 9
Pages Range: 676-682
Journal Issue: 7
DOI: 10.1038/nmeth.2019
Abstract
Fiji is a distribution of the popular open-source software ImageJ focused on biological-image analysis. Fiji uses modern software engineering practices to combine powerful software libraries with a broad range of scripting languages to enable rapid prototyping of image-processing algorithms. Fiji facilitates the transformation of new algorithms into ImageJ plugins that can be shared with end users through an integrated update system. We propose Fiji as a platform for productive collaboration between computer science and biology research communities. © 2012 Nature America, Inc. All rights reserved.
Authors with CRIS profile
Involved external institutions
Eidgenössische Technische Hochschule Zürich (ETHZ) / Swiss Federal Institute of Technology in Zurich
Switzerland (CH)
University of California, Berkeley
United States (USA) (US)
University of Zurich / Universität Zürich (UZH)
Switzerland (CH)
Max-Planck-Institut für molekulare Zellbiologie und Genetik / Max Planck Institute of Molecular Cell Biology and Genetics (MPI-CBG)
Germany (DE)
Julius-Maximilians-Universität Würzburg
Germany (DE)
Institut Pasteur
France (FR)
Massachusetts Institute of Technology (MIT)
United States (USA) (US)
University of Wisconsin - Madison
United States (USA) (US)
University of California Los Angeles (UCLA)
United States (USA) (US)
Switzerland (CH)
University of California, Berkeley
United States (USA) (US)
University of Zurich / Universität Zürich (UZH)
Switzerland (CH)
Max-Planck-Institut für molekulare Zellbiologie und Genetik / Max Planck Institute of Molecular Cell Biology and Genetics (MPI-CBG)
Germany (DE)
Julius-Maximilians-Universität Würzburg
Germany (DE)
Institut Pasteur
France (FR)
Massachusetts Institute of Technology (MIT)
United States (USA) (US)
University of Wisconsin - Madison
United States (USA) (US)
University of California Los Angeles (UCLA)
United States (USA) (US)
How to cite
APA:
Schindelin, J., Arganda-Carreras, I., Frise, E., Kaynig, V., Longair, M., Pietzsch, T.,... Cardona, A. (2012). Fiji: An open-source platform for biological-image analysis. Nature Methods, 9(7), 676-682. https://doi.org/10.1038/nmeth.2019
MLA:
Schindelin, Johannes, et al. "Fiji: An open-source platform for biological-image analysis." Nature Methods 9.7 (2012): 676-682.
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