Partitioning RNAs by length improves transcriptome reconstruction from short-read RNA-seq data (2022) Ringeling FR, Chakraborty S, Vissers C, Reiman D, Patel AM, Lee KH, Hong A, et al. Journal article Genetically encoded photo-switchable molecular sensors for optoacoustic and super-resolution imaging (2022) Mishra K, Fuenzalida-Werner JP, Pennacchietti F, Janowski R, Chmyrov A, Huang Y, Zakian C, et al. Journal article Spatial components of molecular tissue biology (2022) Palla G, Fischer DS, Regev A, Theis FJ Journal article, Review article A Python library for probabilistic analysis of single-cell omics data (2022) Gayoso A, Lopez R, Xing G, Boyeau P, Amiri VVP, Hong J, Wu K, et al. Journal article Wireless closed-loop optogenetics across the entire dorsoventral spinal cord in mice (2022) Kathe C, Michoud F, Schönle P, Rowald A, Brun N, Ravier J, Furfaro I, et al. Journal article Enhancing untargeted metabolomics using metadata-based source annotation. (2022) Gauglitz JM, West KA, Bittremieux W, Williams CL, Weldon KC, Panitchpakdi M, Di Ottavio F, et al. Journal article Mapping single-cell data to reference atlases by transfer learning (2022) Lotfollahi M, Naghipourfar M, Luecken MD, Khajavi M, Buettner M, Wagenstetter M, Avsec Z, et al. Journal article Modeling intercellular communication in tissues using spatial graphs of cells (2022) Fischer DS, Schaar AC, Theis FJ Journal article Generalizing RNA velocity to transient cell states through dynamical modeling (2020) Bergen V, Lange M, Peidli S, Wolf FA, Theis FJ Journal article Benchmarking single-cell RNA-sequencing protocols for cell atlas projects (2020) Mereu E, Lafzi A, Moutinho C, Ziegenhain C, Mccarthy DJ, Alvarez-Varela A, Batlle E, et al. Journal article